| FC Energie Cottbus | VfB Stuttgart II | |||
| SG Dynamo Dresden | FC Hansa Rostock | |||
| SC Preußen Münster | Borussia Dortmund II | |||
| FC Rot-Weiß Erfurt | SpVgg Unterhaching | |||
| Kieler SV Holstein | SV Stuttgarter Kickers | |||
| SV Wehen | MSV Duisburg | |||
| SSV Jahn Regensburg | SC Fortuna Köln | |||
| SG Sonnenhof Großaspach | DSC Arminia Bielefeld | |||
| 1. FSV Mainz 05 II | Chemnitzer FC | |||
| VfL Osnabrück | Hallescher FC |
| 1 | DSC Arminia Bielefeld | 38 22 08 08 75 - 41 74 |
| 2 | MSV Duisburg | 38 20 11 07 63 - 40 71 |
| 3 | Kieler SV Holstein | 38 18 13 07 53 - 30 67 |
| 4 | SV Stuttgarter Kickers | 38 18 11 09 61 - 47 65 |
| 5 | Chemnitzer FC | 38 17 08 13 44 - 36 59 |
| 6 | SG Dynamo Dresden | 38 16 08 14 52 - 48 56 |
| 7 | FC Energie Cottbus | 38 15 11 12 50 - 50 56 |
| 8 | SC Preußen Münster | 38 15 09 14 53 - 49 54 |
| 9 | SV Wehen | 38 15 08 15 54 - 44 53 |
| 10 | Hallescher FC | 38 15 08 15 51 - 53 53 |
| 11 | VfL Osnabrück | 38 14 10 14 49 - 51 52 |
| 12 | FC Rot-Weiß Erfurt | 38 14 09 15 47 - 54 51 |
| 13 | VfB Stuttgart II | 38 13 08 17 48 - 57 47 |
| 14 | SC Fortuna Köln | 38 12 10 16 38 - 47 46 |
| 15 | SG Sonnenhof Großaspach | 38 12 10 16 39 - 60 46 |
| 16 | 1. FSV Mainz 05 II | 38 10 12 16 43 - 52 42 |
| 17 | FC Hansa Rostock | 38 11 08 19 54 - 68 41 |
| 18 | Borussia Dortmund II | 38 08 15 15 41 - 51 39 |
| 19 | SpVgg Unterhaching * | 38 11 08 19 51 - 67 39 |
| 20 | SSV Jahn Regensburg | 38 08 07 23 44 - 65 31 |