| 1 | SG Eintracht Frankfurt | 34 17 13 04 50 - 32 64 |
| 2 | SC Freiburg | 34 18 07 09 57 - 36 61 |
| 3 | 1. FC Nürnberg | 34 17 08 09 52 - 35 59 |
| 4 | FC St. Pauli 1910 | 34 14 14 06 43 - 31 56 |
| 5 | FC Gütersloh | 34 13 16 05 43 - 26 55 |
| 6 | SC Fortuna Köln | 34 11 13 10 53 - 53 46 |
| 7 | Düsseldorfer TSV Fortuna 95 | 34 13 07 14 52 - 54 46 |
| 8 | FC Energie Cottbus | 34 10 15 09 38 - 36 45 |
| 9 | SpVgg Greuther Fürth | 34 11 12 11 32 - 32 45 |
| 10 | 1. FSV Mainz 05 | 34 10 14 10 55 - 48 44 |
| 11 | SpVgg Unterhaching | 34 10 14 10 41 - 35 44 |
| 12 | SV Stuttgarter Kickers | 34 12 08 14 44 - 47 44 |
| 13 | KFC Uerdingen 05 | 34 11 10 13 36 - 40 43 |
| 14 | SG Wattenscheid 09 | 34 10 10 14 41 - 41 40 |
| 15 | VfB Leipzig | 34 10 09 15 31 - 51 39 |
| 16 | FC Carl Zeiss Jena | 34 08 09 17 39 - 61 33 |
| 17 | FSV Zwickau | 34 06 10 18 32 - 55 28 |
| 18 | SV Meppen 1912 | 34 06 09 19 35 - 61 27 |